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GSC MIxS packages for genomes, metagenomes, and marker sequences More...
: S1 t5 ~/ \5 D& Z0 |$ pMIGS Cultured Bacterial/Archaeal1 T( ?: j, W m4 H3 F* W. x
Use for cultured bacterial or archaeal genomic sequences. Organism must have lineage Bacteria or Archaea.
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7 w3 D% J# |1 p* h! ?9 eMIGS Eukaryotic
" C4 \% w, W/ aUse for eukaryotic genomic sequences. Organism must have lineage Eukaryota.
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MIGS Viral
) p, t" e, H( `' U8 r$ o$ J) w' CUse for virus genomic sequences. Organism must have lineage Viruses.% z1 w; K# a. x4 l! L
$ @' h+ W3 ?8 x8 D! ?( F% R$ L7 qMIMAG Metagenome-assembled Genome
$ H8 p2 Y% b9 N' n- bUse for metagenome-assembled genome sequences produced using computational binning tools that group sequences into individual organism genome assemblies starting from metagenomic data sets. Organism cannot contain the term 'metagenome'. Use the MIUVIG package for virus genomes.3 E* b% ]1 B1 d, V0 t$ A2 g8 Y) d
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MIMARKS Specimen6 L" M( h4 O+ W" u9 O" ?9 a
Use for any type of marker gene sequences, eg, 16S, 18S, 23S, 28S rRNA or COI obtained from cultured or voucher-identifiable specimens. Organism cannot contain the term 'metagenome'.
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* `$ C, V; M9 bMIMARKS Survey related7 G0 l9 A& A/ W0 X# p
Use for any type of marker gene sequences, eg, 16S, 18S, 23S, 28S rRNA or COI obtained directly from the environment, without culturing or identification of the organisms. Organism must be a metagenome, where lineage starts with unclassified sequences and scientific name ends with 'metagenome'.
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MIMS Environmental/Metagenome" `; A' o* F- |) P: D
Use for environmental and metagenome sequences. Organism must be a metagenome, where lineage starts with unclassified sequences and scientific name ends with 'metagenome'.' Y$ K) G, a' ^8 s/ [4 V# a% O
+ A' V) W; J) D% jMISAG Single Amplified Genome- Z7 `% o+ U, d5 j
Use for single amplified genome sequences produced by isolating individual cells, amplifying the genome of each cell using whole genome amplification, and then sequencing the amplified DNA. Organism cannot contain the term 'metagenome'.7 W) V6 a6 q9 N/ P) K0 g
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MIUVIG Uncultivated Virus Genome6 H2 _6 j9 h3 s2 f
Use for uncultivated virus genome identified in metagenome and metatranscriptome datasets. Organism must have lineage Viruses. |
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